My dog Cookie always comes running when I pull out the vegetable peeler. I swear, she can hear it slice through the air before it even touches a carrot. Then she starts jumping up and down for carrot scraps. She can be very demanding. I’ve created an entitled little carrot beast, and I’m not sorry in the slightest.
Cookie loved the development process for this carrot muffin recipe. It took me five tries to get them just right, so she got a lot of carrot scraps in the process. They’re based on one of my cookbook recipes (so good!!!).
These hearty muffins are packed with grated carrots, walnuts and raisins. They have lots of texture, yet they’re still light and fluffy.
Thanks to the nuts and whole grains, these muffins make a good grab-and-go breakfast! They also freeze and defrost well. I just microwave individual muffins for 30 to 60 seconds, until they’re gently warmed throughout.
Watch How to Make Carrot Muffins
What makes these carrot muffins healthy?
Granted, “healthy” is a subjective term, but here are a few reasons why I consider these muffins to be more nutritionally redeeming than most:
- Unlike standard carrot muffins made with refined all-purpose flour, these are made with white whole wheat flour. That means they’re made entirely with whole grains, but you can’t taste them because white whole wheat flour has such a mild flavor.
- Protein-rich Greek yogurt replaces sour cream.
- Coconut oil or olive oil replace butter (olive oil is composed of more monounsaturated fat, and is considered to be more heart-healthy)
- Real maple syrup replaces refined sugar, so these muffins are naturally sweetened.
- Combined, you end up with hearty muffins that taste like carrot cake. You can eat carrot cake for breakfast with these babies!
These muffins are easily adapted to vegan and gluten-free diets, too! See my recipe notes for details.
Please let me know how these muffins turn out for you in the comments! I’m always so eager for your feedback.
Craving more wholesome muffins? Here are a few more favorite muffin recipes on Cookie and Kate:
- Healthy Apple Muffins
- Healthy Banana Muffins
- Healthy Blueberry Muffins
- Healthy Raspberry Muffins
- Healthy Pumpkin Muffins
- Healthy Zucchini Muffins
If you’re baking for a special occasion, you’ll love my carrot cake with cream cheese frosting (it’s also naturally sweetened and made with whole wheat flour).
PrintHealthy Carrot Muffins
- Author: Cookie and Kate
- Prep Time: 15 mins
- Cook Time: 13 mins
- Total Time: 28 minutes
- Yield: 12 muffins 1x
- Category: Baked goods
- Method: By hand
- Cuisine: American
Healthy carrot muffins made with whole wheat flour, coconut oil and maple syrup! They taste fantastic, too, of course. These muffins make a great, quick breakfast! Recipe yields 12 muffins.
Ingredients
- 1 ¾ cups white whole wheat flour or regular whole wheat flour
- 1 ½ teaspoons baking powder
- 1 teaspoon ground cinnamon
- ½ teaspoon baking soda
- ½ teaspoon salt
- ½ teaspoon ground ginger
- ¼ teaspoon ground nutmeg
- 2 cups peeled and grated carrots* (from ¾ pound carrots—about 3 large or up to 6 small/medium)
- ½ cup roughly chopped walnuts
- ½ cup raisins (I like golden raisins), tossed in 1 teaspoon flour
- ⅓ cup melted coconut oil or extra-virgin olive oil**
- ½ cup maple syrup or honey
- 2 eggs, preferably at room temperature
- 1 cup plain Greek yogurt***
- 1 teaspoon vanilla extract
- 1 tablespoon turbinado sugar (also called raw sugar), for sprinkling on top
Instructions
- Preheat oven to 425 degrees Fahrenheit. If necessary, grease all 12 cups on your muffin tin with butter or non-stick cooking spray (my pan is non-stick and doesn’t require any grease).
- In a large mixing bowl, combine the flour, baking powder, cinnamon, baking soda, salt, ginger and nutmeg. Blend well with a whisk. In a separate, small bowl, toss the raisins with 1 teaspoon flour so they don’t stick together. Add the grated carrots, chopped walnuts and floured raisins to the other ingredients and stir to combine.
- In a medium mixing bowl, combine the oil and maple syrup and beat together with a whisk. Add the eggs and beat well, then add the yogurt and vanilla and mix well. (If the coconut oil solidifies in contact with cold ingredients, gently warm the mixture in the microwave in 30 second bursts.)
- Pour the wet ingredients into the dry and mix with a big spoon, just until combined (a few lumps are ok). Divide the batter evenly between the 12 muffin cups. Sprinkle the tops of the muffins with turbinado sugar. Bake muffins for 13 to 16 minutes, or until the muffins are golden on top and a toothpick inserted into a muffin comes out clean.
- Place the muffin tin on a cooling rack to cool. If you have leftover muffins, store them, covered, at room temperature for two days, or in the refrigerator for up to 4 days. Freeze leftover muffins for up to 3 months.
Notes
*Carrot grating tips: You can grate the carrots by hand, or for an easier option, use the grating attachment on your food processor.
**A note on oils: I love coconut oil here. I used unrefined coconut oil and can hardly taste it in the final product. Olive oil will lend an herbal note to the muffins, if you’re into that. Vegetable oil has a neutral flavor, but the average vegetable/canola oil is highly processed, so I recommend using cold-pressed sunflower oil or grapeseed oil if possible.
***Note on Greek yogurt: I’ve used a variety of fat percentages and the muffins have always turned out well. Higher fat yogurt will yield a somewhat more rich muffin. You can also substitute plain (not Greek) yogurt, but your muffins might not rise quite as high.
Make it vegan: You can replace the eggs with flax “eggs.” Replace the yogurt with a smaller amount of vegan buttermilk—just mix ⅔ cup non-dairy milk with 2 teaspoons vinegar. Let it rest for 5 minutes before adding it to the other liquid ingredients. Or, use 1 cup vegan yogurt.
Make it dairy free: See buttermilk option above.
Make it egg free: Substitute flax eggs for the regular eggs.
Make it gluten free: Substitute an all-purpose gluten-free flour blend for the whole wheat flour. Bob’s Red Mill makes a GF blend that works well.
Make it nut free: Skip the walnuts!
Make it lower in fat: I would argue that this bread contains a healthy amount of fat, but you can replace the oil with applesauce if you’re following a low-fat diet.
▸ Nutrition Information
Nisha
This recipe needs more cooking time. The middle was soft. I did the recipe exactly as it says. I even gave it an extra 10 minutes and it was still soft in the middle. I will not try this recipe again. It doesn’t taste good. I needed up with 12 soft middle carrot muffins !!!
Kate
Hi Nisha, I’m sorry to hear that. Some ovens can vary or potentially your carrots were really moist. I appreciate you sharing your feedback.
Nisha
Thank you for the reply Ok , I guess it could be that. I will attempt the recipe again to see if that will make any difference.
Trisha
Bottoms burned. Not much flavor.
Kate
I’m sorry to hear that. Where did you have them placed in your oven?
Emily
Love this recipe. I make little additions/subs of diced fruit- whatever needs eating. So far apples, plums and peaches. All have been delicious!! Also have used cashews because I didn’t have walnuts. So soft and tasty for the whole week, stored in the fridge. Love that it’s so yum but full of nutrition.
Courtney
I am experienced cook/baker and have made many of your recipes. To accommodate my daughters dietary restrictions I substituted gluten free flour and flax egg. (As the notes say are acceptable substitutions). This recipe was a total fail. I have never had such a bad outcome! They took forever to bake; the outside became burned and the inside is still mushy. I am so disappointed I wasted my ingredients and time on this.
Kate
Hi Courtney, It could have been doing the gluten free flour and flax eggs in combination. Gluten free flour doesn’t usually hold up as well without a strong binder. I appreciate your feedback and sorry to hear you didn’t have great results.
Paul Doty
Best Carrot muffin recipe ever, I have made this recipe about 6 times before and I get better results with try.
Keep up the good work
Lindsay
These turned out great! Made them exactly to the recipe. Not very sweet which is great for breakfast or healthier snack. Next time I will make the cream cheese frosting to go on them since my husband loves sweets!
Veronica
I mad these last night and they came out perfect. I use EVO, didn’t have raisins so omitted them. I substituted the Greek yogurt for what I had on hand, the SO Coconut yogurt. I juice vegetables so used the leftover carrot pulp from my juicer. They were so good.
Kate
Great to hear, Veronica!
Samantha
I love this recipe! I’ve made it at least 15 or 20 times – it’s terrific. I usually substitute chopped pecans for raisins, based on preferences in my family, otherwise follow everything just as-is. The wonderfully silken batter becomes wonderfully moist muffins. A very therapeutic exercise to make these on a Saturday morning after a challenging week!
Kate
I love that! Thank you for sharing, Samantha.
Hannah
Absolutely love these muffins and make them very regularly! I make them to the recipe and they always turn out perfectly; the only problem is that half the batch gets eaten by my husband and kids before I can pack them away!
Lily
I love the healthy ingredients. This is my go to carrot muffin recipe and my kids love it as well.
Some modifications that take care of the issues:
-bake at F350 for 45 to 50 min to prevent burning of the bottoms while the middle cooks
-the muffins come out a lot less sweet than kids are used to. You could increase the amount of honey to 3/4 cup. What I do is sprinkle the muffins with powdered sugar
S.B
I just made these and my kids loved them! I subbed the Greek yogurt for high protein hazelnut milk with vinegar to make a vegan butter milk but still used egg. I didn’t have the Greek yogurt on hand! They turned out really good! I might reduce the reduce the ginger and nutmeg next time and add a little more cinnamon but just as is my kids loved them! I also omitted the raisins for the kids and walnuts to make them school friendly! Will be making these again! Thanks for the recipe!
Kate
You’re welcome, SB!
HJ
These came out heavy and bland. Also, very oily.
Kate
Hi HJ, I’m sorry to hear that. Did you ove rmix the batter? If it is over mixed, it can impact results. How long did you bake this for?
Kathy
I had more batter than could fit in 12 muffin cups. Would the carrots being finely shredded add too much volume?
Kate
Possibly, or if your carrots varied in sizes. How did it turn out?
M. Coleman
Came out great first time using Greek yogurt Thanks
Kate
Great to hear, M!
Loretta Rochow
Made these today. They were very good, & moist. I used low fat cottage cheese for yogurt. It worked great. Thanks for the recipe. Loretta
Tiffany
I made this recipe today and it turned out exactly as I hoped! Yes, the middle is soft but I actually prefer it.
Used half cup 5% fat and half cup 2% fat Greek yogurt. Added 1/4 tsp cinnamon powder. Cut the maple syrup to 1/3 cup.
These are great guilt free snacks!!! Thank you so much for this recipe!
Deb
Fantastic! I don’t know why people say no flavor . Swapped unsweetened applesauce for one of the eggs. Used chopped up dates as I didn’t have raisins. Toasted walnuts first for extra flavor. Turned off oven after 15 minutes and let them sit for 3 extra . Consistency was moist but done , not mushy as stated by some.
I made extra sure my shredded carrot was well coated with the flour before adding wet ingredients.
Stephanie
I made this recipe and my boyfriend and I absolutely loved them! I had to keep the muffins in the oven a little longer, but the taste texture and overall muffin was fantastic! I didn’t have walnuts at home and subbed for almonds, worked great! Saving this recipe and would absolutely make again!
Kate
Great to hear, Stephanie! I appreciate your review.
Sophie MacDonald
I loved this recipe! It stuck a little more than usual so next time i will add more oil to my muffin tray. They were delicious. Loved them so much I had to eat 2 right away! I switch a little bit of the coconut oil for applesauce and it was just perfect. Thank you!!!
Kate
You’re welcome, Sophie!
Fiona
Made these with my two girls (4 and 6). They came out perfect! The girls love them. Thanks for this recipe
Norma
I would like to substitute the coconut oil with apple sauce. Would I use 1/3 cup, same amount as the coconut oil?
Thanks
Kate
I haven’t tried it so I can’t say for sure, sorry!
A
The recipe itself was easy and tasty but Do NOT use muffin tin liners/baking cups as it sticks and you lose half your muffin to the wrapper. Next time I will cook them directly in the tin
Alyssa
These muffins are too good!! I made a batch for my fiancé and I & they were gone the next day. I omitted the nuts and added chocolate chips instead. I’m about to make more right now!
Kate
That’s great to hear, Alyssa! Thank you for your review.
Cindy
I made these muffins yesterday. Followed the directions exactly including bake time. These carrot muffins are absolutely amazing. Can’t wait to make more.
Kate
Wonderful to hear, Cindy!
Anu
Hi Kate,
Tried this recipe (w/ the eggs subbed out) and left them in for maybe 3 mins more? Super good and not-too-sweet, which was perfect for us :) The insides were quite moist too!
Kate
I’m happy to hear they still turned out for you, Anu!
Jenn
A welcome alternative to overly sweet carrot cake with cream cheese frosting (although, honestly, they’re good every now and again, too :)
I did find the batter rather thick, but this helped to mound it into 12 muffin cups. Had it been thinner, I would have needed one or two more cups.
I baked them for 14 minutes, and the toothpick came out clean. But when I broke one open, it was not done in the middle. An additional 5 minutes did the trick. Ovens vary.
I didn’t have turbinado sugar on hand, and that would have been a nice addition. But they were plenty tasty without it, as I downed two with my morning coffee and felt only a slight bit of remorse.
Your recipes are my most often used. Thanks for sharing.
Kate
Thank you for sharing how you made these, Jenn!
Teresa
I recently made these and what scared me was some of the reviews so rather than following the recipe exactly as I usually do the first time, I got worried and started tweaking the oven temp. Mine turned out fine except that I did not bake mine at 425 degrees but rather at 425 for 5 muted and then I let them finish cooking at 350 and I baked them for 30 minutes and they are moist and very good. I didn’t have raisins and I think that they would add a nice sweetness to it. I will definitely make these again. Thanks for the recipe!
Kate
You’re welcome, Teresa!
J
Made these as a healthy snack for my daughter’s preschool. They loved it!
Kate
That’s great to hear, J!
Tina Delgado
I followed the recipe and they came out perfectly. I have made several of your recipes and have never been disappointed. Thank you for sharing and keep them coming.
Kate
You’re welcome, Tina! Thank you for your review.
Ruth
Would this cook as a cake? Or does it need to be the smaller muffins? I make the muffins with gf flour and my kids LOVE them.
Kate
I would suggest my Favorite Carrot Cake recipe for a cake!
Joy Paradise
Easy to make and absolutely delicious! I recommend using a little spray coconut oil to the cupcake liner or muffin tin.
Eileen
I have made these twice for my Sister who is diabetic. She absolutely loves them. Of course I had to try one myseand found them really nice. I squeezed out the excess water from the carrots and cooked them an extra 15 mins. They were done in an air fryer with the highest bake temperature of 140 so that was probably the reason. I will bake them again. Thank u for a lovely recipe
Ivy
Fantastic healthy, easy breakfast. I substituted Bob’s Red Mill gluten free all purpose baking flour for wheat, and swapped in unsweetened applesauce for maple syrup. They required a bit extra baking time, perhaps because of the size of my muffin cups, and turned out perfectly. Thanks for another fabulous recipe, Kate!
Kate
You’re welcome, Ivy!
Marianne Kunst
I LOVE these muffins. I have been juicing carrots, celery, etc. and use the carrot that would normally be discarded in my muffins. They are moist and tasty. I use coconut oil, and am thinking of trying banana or pineapple in future batches, but may have to adjust dry ingredients..anybody tried these additions?
Kate
Great to hear, Marianne! I haven’t tried those variations.
F
Ok after my last review my partner had one and he has said he really likes them and thinks the moistness makes them more palatable because whole grain flour isnt as light and fluffy. So here is his 5 star rating haha!
Kate
Thank you for coming back to comment!
Kate
I’ve made these countless of times and I can’t figure out why everytime its soggy inside and dence. I’ve definitely cooked it long enough , so I don’t know why I keep having that issue with this recipe?
Kate
I’m sorry to hear that. Are you cooking at an elevation? That can impact baking results.
Sandy
Hi Kate,
I have made these with great success! Other than replacing the raisins with dates, as some of our family doesn’t like raisins, I make them exactly according to the recipe. What I am wondering is if you think I could make these in a loaf pan? and if so, would it be better in a 41/2″ x8″ or the 9″x5″. Thankyou
Kate
I haven’t tried it, but if you do let me know how it turns out!
Abbey
I used 9×5 and it turned out great. Just the right size and rise.
Sandy
Thanks so much Abbey for letting me know this!
Sometimes I prefer to make a loaf and sometimes muffins. It’s great to know that this recipe translates so well. I do love these muffins. Did you change the baking temperature?
Alejandra
Great recipe! I skipped the raisins and reduced the honey to 1/4 cup. The muffins came out perfect!
Misha
Ok I tried these a second time only this time making them vegan. I used flax eggs, applesauce and made buttermilk with almond milk and vinegar. I cut down on the maple syrup to ¼th cup, which was just a little less sweet than I wanted but still gave a hint of sweetness. I am trying to cut back on all forms of sugar including the more healthy types. I am happy to say that the muffins were just as good and may have been better than the regular ones.
Paul Peasegood
Great recipe, good way to get my kids to eat some vegetables
Carrie
I harvested carrots from my garden last week and looked for a healthy muffin recipe. I made this recipe tonight and the muffins are delicious! Followed the recipe and added 10 minutes to the bake time, perfection!
Thanks for sharing your recipe, it’s a keeper!
Kate
That’s great to hear, Carrie!
Sheila Emily Beard
I have to eat gluten-free. Could I substitute almond flour for this?
Kate
Almond flour isn’t a great 1:1. You can try oat flour here. Refer to my How to Make Oat Flour for reference on measurement.
Shante Henderson
Hello! Just made these and they are delicious! Not to sweet, not to plain! My kiddos love them and one doesn’t like raisins and the other doesn’t like walnuts. Thank you for this recipe! Looking forward to you other recipes. :)
Laura
I made this for my toddler’s birthday potluck and multiple people asked for the recipe. Have made them since with the intention of sharing, and we ate them too fast! Big hit!
I did them as mini muffins. My oven runs a little cold, but 13 minutes was the sweet spot for me at the original baking temp.
mazzo
Hi, I love your banana bread and want to make this, but I live in Europe. I’m not sure if this recipe or the other carrot cake would be best as I put everything in mini loaf tins. If you recommend this one, can you please give me the measurements in grams/mls? thank you
Kate
I haven’t tried it so I can’t say for sure, sorry! I don’t provide conversions, but I know others have used online converters or purchased US measurements if they make my recipes often.
Kristen L Richard
GREAT! I am not very good at baking and these still turned out amazing. Thank you!
Kate
You’re welcome, Kristen!
Amy
Ok, I don’t usually leave comments, but these muffins came out perfect! I followed the directions exactly as written, (used whole wheat flour,) and had no issues. I used a silicone muffin pan and they popped right out. Can’t believe all the negativity on here. Mine taste amazing! I will make these again and again:)
Kate
I’m so glad you did, Amy! Thank you for your review.
Inge
Thank you for this lovely recipe, which comes highly recommended by my 3.5-year-old. I did need to cook the muffins for another 10 minutes or so (after 16 minutes, they were still quite raw inside), but they came out really nicely. Extra delicious cut in half with some cream cheese, almond butter, and hemp seeds on top.
Kate
You’re welcome, Inge! I appreciate your review.
Kate
I love your pumpkin muffins! Can these carrot muffins be made without dried fruit? I have an intolerance to fructose so can’t eat really any of it these days. Only a small amount.
Thanks,
Kate.
Kate
Great to hear! Sure, you can omit if you would like.
KS
My favorite breakfast cupcake recipe. I mixed my flours (white, oat and semolina). Also used coconut cream and sunflower oil instead of Greek yogurt and coconut oil. Plus threw in a handful full of raisins. First time it baked 13 minutes. Second time only 10min.
Andrea Lombard
Made these first time this morning. They turned out perfectly and are full of flavour (I admit that I don’t measure spices and added a few extra dashes of nutmeg and ginger). What I don’t understand is the baking temp. I have never seen a muffin, cake or loaf baked at 425. I reduced to my standard (375 for 20 mins) and added 5 mins because I bake GF which needs a bit extra. Can you explain the rationale for 425? Thank you. I will definitely make these again.
Kate
That’s great to hear, Andrea!
Laura Nelson
I love Cookie and Kate bread and muffins recipes, there is a similarity between all ofthem, with respect to basic essential ingredients, same basic road map. For me, 1.5 cups of flour works better than 1 3/4 cups. I also use both baking soda AND powder, makes for nice rise. I use 1/4 cups EVOO, I don’t detect a flavor change, and it’s a generous amount of fat for bread or muffins, IMO. We are all different. When I’m craving chocolate, such as today, I’ll add 1/2 cup cocoa powder and 1/3-1/2 cup chocolate chips, instead of raisins. Like to mix it up, but this is a great recipe to build on and make your own!